Repository Manager

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A production-grade MCP server for managing git projects, offering dynamic tool selection and enterprise-grade security.

by Knuckles-Team

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A production-grade MCP server for managing git projects, offering dynamic tool selection and enterprise-grade security.

README

CLI or API | MCP | Agent

Version: 3.4.0

Documentation — Installation, deployment, usage across the CLI, API, MCP, and agent interfaces, and the phased multi-repository release workflows are maintained in the official documentation.

Overview

Repository Manager is a production-grade Agent and Model Context Protocol (MCP) server designed to interface directly with Manage your git projects.

Key Features

Consolidated Action-Routed MCP Tools: Minimizes token overhead and eliminates tool bloat in LLM contexts by grouping methods into optimized, togglable tool modules.
Enterprise-Grade Security: Comprehensive support for Eunomia policies, OIDC token delegation, and granular execution context tracking.
Integrated Graph Agent: Built-in Pydantic AI agent supporting the Agent Control Protocol (ACP) and standard Web interfaces (AG-UI).
Native Telemetry & Tracing: Out-of-the-box OpenTelemetry exports and native Langfuse tracing.

CLI or API

This agent wraps the Manage your git projects API. You can interact with it programmatically or via its integrated execution entrypoints.

Detailed instructions on how to use the underlying API wrappers, extended schema bindings, and developer SDK references are maintained in docs/index.md.

MCP

This server utilizes dynamic Action-Routed tools to optimize token overhead and maximize IDE compatibility.

Available MCP Tools

This table is auto-generated from the live server — do not edit by hand.

Condensed action-routed tools (`MCP_TOOL_MODE=condensed`)

MCP Tool	Toggle Env Var	Description
`repository_ingest_repositories`	`MISCTOOL`	Natively ingest git repositories into epistemic-graph as typed :GitRepository nodes.
`rm_build`	`PROJECT_MANAGEMENTTOOL`	Content-addressed build broker for ANY repository (CONCEPT:RM-TASK-LEDGER).
`rm_concepts`	`DEVELOPMENT_SURFACESTOOL`	Concept-id claim coordination against RMDD-16's central authority.
`rm_gates`	`PROJECT_MANAGEMENTTOOL`	Run and inspect the two-tier (fast/heavy) pre-commit gate across repos.
`rm_git`	`GIT_OPERATIONSTOOL`	Typed bulk Git operations; arbitrary host commands are prohibited.
`rm_lane`	`PROJECT_MANAGEMENTTOOL`	The lane lifecycle for concurrent agents and humans (CONCEPT:RM-LANE-DOCTOR).
`rm_merge_queue`	`PROJECT_MANAGEMENTTOOL`	Serialized merge queue for ANY git repository (CONCEPT:RM-MERGE-QUEUE).
`rm_projects`	`PROJECT_MANAGEMENTTOOL`	Bulk install, build, and validate Python projects.
`rm_remote_workers`	`DEVELOPMENT_SURFACESTOOL`	Remote worker registry, immutable source staging, and artifact transport.
`rm_workspace`	`WORKSPACE_MANAGEMENTTOOL`	Core workspace organization, configuration, and maintenance.
`rm_worktree`	`PROJECT_MANAGEMENTTOOL`	Manage git worktrees for concurrent multi-session development (CONCEPT:RM-WORKTREE).

Verbose 1:1 API-mapped tools (`MCP_TOOL_MODE=verbose` or `both`)

42 per-operation tools — one per public API method (click to expand)

MCP Tool	Toggle Env Var	Description
`repository_manager_add_project`	`GITTOOL`	Stage all changes (git add -A) for a single Git project.
`repository_manager_add_projects`	`GITTOOL`	Stage all changes for multiple projects in parallel.
`repository_manager_build_projects`	`GITTOOL`	Build projects serially so compilation cannot exhaust the workstation.
`repository_manager_bulk_bump`	`GITTOOL`	Bumps the version for all projects in the workspace in parallel.
`repository_manager_bump_version`	`GITTOOL`	Bump the version of the project using bump2version.
`repository_manager_cleanup_artifacts`	`GITTOOL`	Removes test artifacts and temporary files from the specified directory.
`repository_manager_clone_projects`	`GITTOOL`	Clone all specified Git projects in parallel using multiple threads.
`repository_manager_clone_repository`	`GITTOOL`	Clone a single Git repository to a specific target path.
`repository_manager_commit_code_project`	`GITTOOL`	Stage ALL changes (git add -A), optionally gate on pre-commit, then commit.
`repository_manager_commit_code_projects`	`GITTOOL`	Concurrently stage + pre-commit + commit feature code across projects.
`repository_manager_commit_project`	`GITTOOL`	Commit staged changes (git commit -m "{message}") for a single Git project.
`repository_manager_commit_projects`	`GITTOOL`	Commit staged changes for multiple projects in parallel.
`repository_manager_create_project`	`GITTOOL`	Create a new project directory and initialize it as a git repository.
`repository_manager_discover_projects`	`GITTOOL`	Scan self.path for immediate subdirectories containing a .git folder.
`repository_manager_generate_markdown_summary`	`GITTOOL`	Generates a beautiful markdown summary of bulk operation results.
`repository_manager_generate_workspace_template`	`GITTOOL`	Generates a workspace.yml template at the specified path.
`repository_manager_get_consolidated_skill_paths`	`GITTOOL`	Returns absolute paths to the 15 specific building and documentation skills.
`repository_manager_get_project_map`	`GITTOOL`	Returns the mapping of repository URLs to their local project paths.
`repository_manager_get_readme`	`GITTOOL`	Get the content and path of the README.md file in the specified path.
`repository_manager_get_workspace_projects`	`GITTOOL`	Returns a list of project basenames (e.g. 'genius-agent') defined in the workspace.
`repository_manager_git_action`	`GITTOOL`	Execute a Git command in the specified directory.
`repository_manager_install_project`	`GITTOOL`	Install a Python project using pip install -e .[extra].
`repository_manager_install_projects`	`GITTOOL`	Bulk installs Python and Node projects in the workspace.
`repository_manager_list_branches`	`GITTOOL`	Returns a dictionary mapping project basenames to their current active git branch.
`repository_manager_load_projects_from_yaml`	`GITTOOL`	Loads repository URLs from a YAML workspace file using Pydantic models.
`repository_manager_maintain_projects`	`GITTOOL`	Execute the phased bumpversion workflow: pre-commits + phased bumping.
`repository_manager_phased_bumpversion`	`GITTOOL`	Execute the phased bumpversion workflow: pre-commits + phased bumping.
`repository_manager_phased_push`	`GITTOOL`	Execute the phased git push workflow.
`repository_manager_pre_commit`	`GITTOOL`	Execute pre-commit commands in the specified path.
`repository_manager_pre_commit_projects`	`GITTOOL`	Execute pre-commit commands for all projects in parallel.
`repository_manager_pull_project`	`GITTOOL`	Pull updates for a single Git project and optionally checkout the default branch.
`repository_manager_pull_projects`	`GITTOOL`	Pull updates for multiple projects in parallel.
`repository_manager_push_project`	`GITTOOL`	Push committed updates and tags for a single clean Git project.
`repository_manager_push_projects`	`GITTOOL`	Push updates for multiple projects in parallel.
`repository_manager_save_workspace_config`	`GITTOOL`	Saves the current or provided WorkspaceConfig to a YAML file.
`repository_manager_set_threads`	`GITTOOL`	Set the number of threads for parallel processing.
`repository_manager_setup_from_yaml`	`GITTOOL`	Sets up the workspace structure from a YAML file.
`repository_manager_test_projects`	`GITTOOL`	Execute pytests for the specified projects in parallel.
`repository_manager_update_dependency`	`GITTOOL`	Update a package's pinned version in a deps file (pyproject OR requirements).
`repository_manager_validate_and_release`	`GITTOOL`	Validate projects in parallel, optionally triggering a release if successful.
`repository_manager_validate_single_project`	`GITTOOL`	Validates a single repository by running its FAST-tier gates.
`repository_manager_worktree_hygiene`	`GITTOOL`	Audit (and optionally prune) session worktrees as a release-flow step.

11 action-routed tool(s) · 42 verbose 1:1 tool(s). Each is enabled unless its <DOMAIN>TOOL toggle is set false; MCP_TOOL_MODE selects the surface (intent default — the six verb-tools, granular set loaded on demand · condensed action-routed · verbose 1:1 · both). Auto-generated — do not edit.

Detailed tool schemas, parameter shapes, and validation constraints are preserved in docs/usage.md.

Dynamic Tool Selection & Visibility

This MCP server supports dynamic toolset selection and visibility filtering at runtime. This allows you to restrict the set of exposed tools in order to prevent blowing up the LLM's context window.

You can configure tool filtering via multiple input channels:

CLI Arguments: Pass --tools or --toolsets (or their disabled counterparts --disabled-tools and --disabled-toolsets) during startup.
Environment Variables: Define standard environment variables:
- MCP_ENABLED_TOOLS / MCP_DISABLED_TOOLS
- MCP_ENABLED_TAGS / MCP_DISABLED_TAGS
HTTP SSE Request Headers: Pass custom headers during transport initialization:
- x-mcp-enabled-tools / x-mcp-disabled-tools
- x-mcp-enabled-tags / x-mcp-disabled-tags
HTTP SSE Request Query Parameters: Append query parameters directly to your transport connection URL:
- ?tools=tool1,tool2
- ?tags=tag1

When query strings or parameters are supplied, an LLM-free Knowledge Graph resolution layer (using DynamicToolOrchestrator) matches query intents against known tool tags, names, or descriptions, with safe fallback and automated 24-hour background cache refreshing.

MCP Configuration Examples

Install the connector-focused [mcp] extra. Examples use repository-manager[mcp] to add FastMCP / FastAPI through agent-utilities[mcp]; the required Agent Utilities core still carries epistemic-graph[full]. The [agent-runtime] extra additionally enables model orchestration.

stdio Transport (local IDEs — Cursor, Claude Desktop, VS Code)

{
  "mcpServers": {
    "repository-manager-mcp": {
      "command": "uvx",
      "args": [
        "--from",
        "repository-manager[mcp]",
        "repository-manager-mcp"
      ],
      "env": {
        "MCP_TOOL_MODE": "intent",
        "BUILDTOOL": "True",
        "CONCEPTSTOOL": "True",
        "DEVELOPMENT_SURFACESTOOL": "True",
        "GATESTOOL": "True",
        "GH_TOKEN": "your_github_token_here",
        "GITHUB_TOKEN": "your_github_token_here",
        "GITLAB_HOST": "https://gitlab.com",
        "GITLAB_PRIVATE_TOKEN": "your_gitlab_token_here",
        "GITLAB_TOKEN": "your_gitlab_token_here",
        "GITLAB_URL": "https://gitlab.com",
        "GIT_OPERATIONSTOOL": "True",
        "LANETOOL": "True",
        "MERGE_QUEUETOOL": "True",
        "MISCTOOL": "True",
        "PROJECTTOOL": "True",
        "PROJECT_MANAGEMENTTOOL": "True",
        "REMOTE_WORKERSTOOL": "True",
        "REPOSITORY_MANAGER_DEFAULT_BRANCH": "main",
        "REPOSITORY_MANAGER_THREADS": "12",
        "RM_GATE_BEFORE_PUSH": "true",
        "RM_JOB_STALE_SECONDS": "1800",
        "RM_MAX_WORKERS": "8",
        "WORKSPACE_MANAGEMENTTOOL": "True",
        "WORKSPACE_YML": "workspace.yml",
        "WORKTREETOOL": "True"
      }
    }
  }
}

Runtime references require an alias-aware launcher such as GraphOS. Other launchers must omit those entries and inject the resolved values through their own runtime secret boundary.

Streamable-HTTP Transport (networked / production)

{
  "mcpServers": {
    "repository-manager-mcp": {
      "command": "uvx",
      "args": [
        "--from",
        "repository-manager[mcp]",
        "repository-manager-mcp",
        "--transport",
        "streamable-http",
        "--port",
        "8000"
      ],
      "env": {
        "TRANSPORT": "streamable-http",
        "HOST": "127.0.0.1",
        "PORT": "8000",
        "MCP_TOOL_MODE": "intent",
        "BUILDTOOL": "True",
        "CONCEPTSTOOL": "True",
        "DEVELOPMENT_SURFACESTOOL": "True",
        "GATESTOOL": "True",
        "GH_TOKEN": "your_github_token_here",
        "GITHUB_TOKEN": "your_github_token_here",
        "GITLAB_HOST": "https://gitlab.com",
        "GITLAB_PRIVATE_TOKEN": "your_gitlab_token_here",
        "GITLAB_TOKEN": "your_gitlab_token_here",
        "GITLAB_URL": "https://gitlab.com",
        "GIT_OPERATIONSTOOL": "True",
        "LANETOOL": "True",
        "MERGE_QUEUETOOL": "True",
        "MISCTOOL": "True",
        "PROJECTTOOL": "True",
        "PROJECT_MANAGEMENTTOOL": "True",
        "REMOTE_WORKERSTOOL": "True",
        "REPOSITORY_MANAGER_DEFAULT_BRANCH": "main",
        "REPOSITORY_MANAGER_THREADS": "12",
        "RM_GATE_BEFORE_PUSH": "true",
        "RM_JOB_STALE_SECONDS": "1800",
        "RM_MAX_WORKERS": "8",
        "WORKSPACE_MANAGEMENTTOOL": "True",
        "WORKSPACE_YML": "workspace.yml",
        "WORKTREETOOL": "True"
      }
    }
  }
}

Alternatively, connect to a pre-deployed Streamable-HTTP instance by url:

{
  "mcpServers": {
    "repository-manager-mcp": {
      "url": "http://localhost:8000/repository-manager-mcp/mcp"
    }
  }
}

Run a reviewed container image as a least-privilege stdio child (no listener or published port):

docker run -i --rm \
  --read-only \
  --cap-drop=ALL \
  --security-opt=no-new-privileges \
  --pids-limit=256 \
  --tmpfs /tmp:rw,noexec,nosuid,nodev,size=64m \
  -e TRANSPORT=stdio \
  -e MCP_TOOL_MODE=intent \
  -e BUILDTOOL=True \
  -e CONCEPTSTOOL=True \
  -e DEVELOPMENT_SURFACESTOOL=True \
  -e GATESTOOL=True \
  -e GH_TOKEN=your_github_token_here \
  -e GITHUB_TOKEN=your_github_token_here \
  -e GITLAB_HOST=https://gitlab.com \
  -e GITLAB_PRIVATE_TOKEN=your_gitlab_token_here \
  -e GITLAB_TOKEN=your_gitlab_token_here \
  -e GITLAB_URL=https://gitlab.com \
  -e GIT_OPERATIONSTOOL=True \
  -e LANETOOL=True \
  -e MERGE_QUEUETOOL=True \
  -e MISCTOOL=True \
  -e PROJECTTOOL=True \
  -e PROJECT_MANAGEMENTTOOL=True \
  -e REMOTE_WORKERSTOOL=True \
  -e REPOSITORY_MANAGER_DEFAULT_BRANCH=main \
  -e REPOSITORY_MANAGER_THREADS=12 \
  -e RM_GATE_BEFORE_PUSH=true \
  -e RM_JOB_STALE_SECONDS=1800 \
  -e RM_MAX_WORKERS=8 \
  -e WORKSPACE_MANAGEMENTTOOL=True \
  -e WORKSPACE_YML=workspace.yml \
  -e WORKTREETOOL=True \
  registry.example.invalid/repository-manager@sha256:<digest> repository-manager-mcp

For containerized network HTTP, supply an authenticated TLS ingress (or direct server TLS), exact MCP_ALLOWED_HOSTS, and an exact trusted-proxy CIDR policy through the operator-owned deployment profile. The generator does not emit an unauthenticated non-loopback listener.

Auto-generated from the code-read env surface (MCP_TOOL_MODE + package vars) — do not edit.

Additional Deployment Options

repository-manager can run as a local stdio process or container, or behind a remote network boundary. The Deployment guide carries the detailed transport contract.

Local container — launch a reviewed immutable image as a least-privilege stdio child with no listener or published port.
Remote URL — connect through an operator-supplied authenticated HTTPS ingress. Keep its URL, outbound identity references, trust profile, and exact MCP_ALLOWED_HOSTS in AgentConfig.

Agent

This repository features a fully integrated Pydantic AI Graph Agent. It communicates over the Agent Control Protocol (ACP) and interacts seamlessly with the Agent Web UI (AG-UI) and Terminal interface.

Running the Agent CLI

To start the interactive command-line agent:

# Set workspace + git operation settings
export REPOSITORY_MANAGER_WORKSPACE="your_value"
export WORKSPACE_YML="workspace.yml"
export REPOSITORY_MANAGER_DEFAULT_BRANCH="main"
export REPOSITORY_MANAGER_THREADS="12"
# Optional VCS provider credentials
export GITLAB_TOKEN="your_gitlab_token"
export GITHUB_TOKEN="your_github_token"

# Run the agent server
repository-manager-agent --provider openai --model-id gpt-4o

Docker Compose Orchestration

The following docker/agent.compose.yml configures the Agent, Web UI, and Terminal Interface together:

version: '3.8'

services:
  repository-manager-mcp:
    image: example/repository-manager:mcp
    container_name: repository-manager-mcp
    hostname: repository-manager-mcp
    restart: always
    env_file:
      - ../.env
    environment:
      - PYTHONUNBUFFERED=1
      - HOST=0.0.0.0
      - PORT=8000
      - TRANSPORT=streamable-http
    ports:
      - "8000:8000"
    healthcheck:
      test: ["CMD", "python3", "-c", "import urllib.request; urllib.request.urlopen('http://localhost:8000/health')"]
      interval: 30s
      timeout: 10s
      retries: 3
      start_period: 10s
    logging:
      driver: json-file
      options:
        max-size: "10m"
        max-file: "3"

  repository-manager-agent:
    image: example/repository-manager@sha256:<digest>
    container_name: repository-manager-agent
    hostname: repository-manager-agent
    restart: always
    depends_on:
      - repository-manager-mcp
    env_file:
      - ../.env
    command: [ "repository-manager-agent" ]
    environment:
      - PYTHONUNBUFFERED=1
      - HOST=0.0.0.0
      - PORT=9047
      - MCP_URL=http://repository-manager-mcp:8000/mcp
      - PROVIDER=${PROVIDER:-openai}
      - MODEL_ID=${MODEL_ID:-gpt-4o}
      - ENABLE_WEB_UI=True
      - ENABLE_OTEL=True
    ports:
      - "9047:9047"
    healthcheck:
      test: ["CMD", "python3", "-c", "import urllib.request; urllib.request.urlopen('http://localhost:9047/health')"]
      interval: 30s
      timeout: 10s
      retries: 3
      start_period: 10s
    logging:
      driver: json-file
      options:
        max-size: "10m"
        max-file: "3"

Detailed graph node architecture explanations, custom skill configurations, and agentic trace guides are available in docs/deployment.md.

Environment Variables

Package environment variables

Variable	Example	Description
`HOST`	`0.0.0.0`
`PORT`	`8000`
`TRANSPORT`	`stdio`	options: stdio, streamable-http, sse
`ENABLE_OTEL`	`True`
`OTEL_EXPORTER_OTLP_ENDPOINT`	`http://localhost:8080/api/public/otel`
`OTEL_EXPORTER_OTLP_PUBLIC_KEY_REF`	`secret://observability/otlp-public-key`
`OTEL_EXPORTER_OTLP_SECRET_KEY_REF`	`secret://observability/otlp-secret-key`
`OTEL_EXPORTER_OTLP_PROTOCOL`	`http/protobuf`
`EUNOMIA_TYPE`	`none`	options: none, embedded, remote
`EUNOMIA_POLICY_FILE`	`mcp_policies.json`
`EUNOMIA_REMOTE_URL`	`http://eunomia-server:8000`
`AGENT_UTILITIES_CONFIG_DIR`	—	override of ~/.config/agent-utilities for the capacity-seed inventory.yaml lookup
`AGENT_UTILITIES_WORKSPACE_ROOT`	—	runtime-injected root; never persist a machine path
`REPOSITORY_MANAGER_WORKSPACE`	—	optional override of AGENT_UTILITIES_WORKSPACE_ROOT
`WORKSPACE_PATH`	—	compatibility workspace-root override
`WORKSPACE_YML`	`workspace.yml`	prefer the XDG agent-utilities copy at runtime
`WORKSPACE_REPORTS`	—	optional report directory; defaults beneath the workspace root
`REPOSITORY_MANAGER_WORKTREE_ROOT`	—	optional worktree root; injected at runtime
`REPOSITORY_MANAGER_DEFAULT_BRANCH`	`main`	default branch name for git operations
`REPOSITORY_MANAGER_THREADS`	`12`	parallel threads for git operations
`RM_MAX_WORKERS`	`8`	explicit worker-count override (skips auto-sizing from CPU count)
`RM_JOB_STALE_SECONDS`	`1800`	seconds before an in-flight job is treated as stale by the watchdog
`RM_GATE_BEFORE_PUSH`	`true`	run the pre-commit gate before pushing (set false to bypass)
`RM_TASK_LEDGER_FLEET`	—	optional: caller identity (claude/codex/human/vllm) recorded against a task_queue reservation
`RM_TASK_LEDGER_SESSION`	—	optional: caller's lane/session id recorded against a task_queue reservation
`RM_DEPENDENCY_READINESS_OVERRIDE_REASON`	—	optional: non-empty human reason bypasses the dependency-readiness gate
`UV_INDEX_URL`	—	optional: package index consulted by the dependency-readiness artifact-availability check
`UV_EXTRA_INDEX_URL`	—	optional: space-separated extra package indexes for the dependency-readiness check
`PIP_INDEX_URL`	—	optional: pip fallback index consulted by the dependency-readiness artifact-availability check
`PIP_EXTRA_INDEX_URL`	—	optional: space-separated pip fallback extra indexes for the dependency-readiness check
`REPOSITORY_MANAGER_CLONE_FILTER`	—	optional git clone filter: blob:none or tree:0
`CODE_ENHANCER_SCRIPTS_DIR`	—	optional code-enhancer helper scripts directory
`GITLAB_URL`	`https://gitlab.com`	GitLab base URL (alias: GITLAB_HOST)
`GITLAB_HOST`	`https://gitlab.com`	legacy alias for GITLAB_URL
`GITLAB_TOKEN`	secret-injected	GitLab access token (alias: GITLAB_PRIVATE_TOKEN)
`GITLAB_PRIVATE_TOKEN`	secret-injected	legacy alias for GITLAB_TOKEN
`GITHUB_TOKEN`	secret-injected	GitHub access token (alias: GH_TOKEN)
`GH_TOKEN`	secret-injected	legacy alias for GITHUB_TOKEN
`GIT_OPERATIONSTOOL`	`True`	These names match the authoritative "Toggle Env Var" column in the README MCP tools table (condensed action-routed surface).
`PROJECT_MANAGEMENTTOOL`	`True`
`WORKSPACE_MANAGEMENTTOOL`	`True`
`MISCTOOL`	`True`
`DEVELOPMENT_SURFACESTOOL`	`True`
`LANETOOL`	`True`
`WORKTREETOOL`	`True`
`MERGE_QUEUETOOL`	`True`
`BUILDTOOL`	`True`
`PROJECTTOOL`	`True`
`GATESTOOL`	`True`
`CONCEPTSTOOL`	`True`
`REMOTE_WORKERSTOOL`	`True`
`AUTH_TYPE`	`bearer`	authentication type (e.g. bearer, none)
`LLM_API_KEY`	secret-injected
`LLM_BASE_URL`	`https://api.openai.com/v1`
`MCP_URL`	`http://localhost:8000`

Inherited agent-utilities variables (apply to every connector)

Variable	Example	Description
`MCP_TOOL_MODE`	`intent`	Tool surface: `intent` \| `condensed` \| `verbose` \| `both`
`MCP_ENABLED_TOOLS`	—	Comma-separated tool allow-list
`MCP_DISABLED_TOOLS`	—	Comma-separated tool deny-list
`MCP_ENABLED_TAGS`	—	Comma-separated tag allow-list
`MCP_DISABLED_TAGS`	—	Comma-separated tag deny-list
`MCP_CLIENT_AUTH`	—	Outbound MCP child auth: `oidc-client-credentials` \| `basic` \| `none`
`OIDC_CLIENT_ID`	—	OIDC client id (service-account auth)
`OIDC_CLIENT_SECRET_REF`	`secret://identity/oidc-client-secret`	Runtime secret reference for the OIDC service account
`MCP_BASIC_AUTH_USERNAME`	—	HTTP Basic username (`MCP_CLIENT_AUTH=basic`)
`MCP_BASIC_AUTH_PASSWORD_REF`	`secret://identity/mcp-basic-password`	Runtime secret reference for HTTP Basic auth (`MCP_CLIENT_AUTH=basic`)
`DEBUG`	`False`	Verbose logging
`PYTHONUNBUFFERED`	`1`	Unbuffered stdout (recommended in containers)
`PROVIDER`	`openai`	LLM provider for the agent
`MODEL_ID`	`gpt-4o`	Model id for the agent
`ENABLE_WEB_UI`	`True`	Serve the AG-UI web interface

55 package + 15 inherited variable(s). Auto-generated from .env.example + the shared agent-utilities set — do not edit.

Every variable the server and agent read, sourced from .env.example.

MCP server / transport

Variable	Description	Default
`TRANSPORT`	`stdio`, `streamable-http`, or `sse`	`stdio`
`HOST`	Bind host (HTTP transports)	`0.0.0.0`
`PORT`	Bind port (HTTP transports)	`8000`
`MCP_TOOL_MODE`	Tool surface: `condensed`, `verbose`, or `both`	`condensed`
`MCP_ENABLED_TOOLS` / `MCP_DISABLED_TOOLS`	Comma-separated tool allow/deny list	—
`MCP_ENABLED_TAGS` / `MCP_DISABLED_TAGS`	Comma-separated tag allow/deny list	—
`PYTHONUNBUFFERED`	Unbuffered stdout (recommended in containers)	`1`

Workspace & repository management

Variable	Description	Default
`REPOSITORY_MANAGER_WORKSPACE`	Root directory of the git workspace to manage	deployment-provided
`WORKSPACE_PATH`	Fallback workspace root when `REPOSITORY_MANAGER_WORKSPACE` is unset	deployment-provided
`WORKSPACE_YML`	Workspace manifest filename (resolved under the workspace root)	`workspace.yml`
`WORKSPACE_REPORTS`	Directory where generated reports are written	—
`REPOSITORY_MANAGER_WORKTREE_ROOT`	Root directory for managed git worktrees	deployment-provided
`REPOSITORY_MANAGER_DEFAULT_BRANCH`	Default branch name for git operations	`main`
`REPOSITORY_MANAGER_THREADS`	Parallel threads for git operations	`12`

Operations & gating

Variable	Description	Default
`RM_MAX_WORKERS`	Explicit worker-count override (skips auto-sizing from CPU count)	—
`RM_JOB_STALE_SECONDS`	Seconds before an in-flight job is treated as stale by the watchdog	`1800`
`RM_GATE_BEFORE_PUSH`	Run the pre-commit gate before pushing (set `false` to bypass)	`true`

Version-control provider credentials

Variable	Description	Default
`GITLAB_URL`	GitLab base URL (alias: `GITLAB_HOST`)	—
`GITLAB_TOKEN`	GitLab access token (alias: `GITLAB_PRIVATE_TOKEN`)	—
`GITHUB_TOKEN`	GitHub access token (alias: `GH_TOKEN`)	—

Tool toggles

Each action-routed tool can be disabled individually via its toggle env var (set to false). The full list is in the Available MCP Tools table above.

Variable	Description	Default
`GIT_OPERATIONSTOOL`	Enable bulk Git operations (`rm_git`)	`True`
`PROJECT_MANAGEMENTTOOL`	Enable project + worktree management (`rm_projects` / `rm_worktree`)	`True`
`WORKSPACE_MANAGEMENTTOOL`	Enable workspace organization (`rm_workspace`)	`True`

Telemetry & governance

Variable	Description	Default
`ENABLE_OTEL`	Enable OpenTelemetry export	`True`
`OTEL_EXPORTER_OTLP_ENDPOINT`	OTLP collector endpoint	—
`OTEL_EXPORTER_OTLP_PUBLIC_KEY` / `OTEL_EXPORTER_OTLP_SECRET_KEY`	OTLP auth keys	—
`OTEL_EXPORTER_OTLP_PROTOCOL`	OTLP protocol (e.g. `http/protobuf`)	—
`EUNOMIA_TYPE`	Authorization mode: `none`, `embedded`, `remote`	`none`
`EUNOMIA_POLICY_FILE`	Embedded policy file	`mcp_policies.json`
`EUNOMIA_REMOTE_URL`	Remote Eunomia server URL	—

Agent CLI (full `[agent]` runtime only)

Variable	Description	Default
`MCP_URL`	URL of the MCP server the agent connects to	`http://localhost:8000/mcp`
`PROVIDER`	LLM provider (e.g. `openai`)	`openai`
`MODEL_ID`	Model id (e.g. `gpt-4o`)	`gpt-4o`
`ENABLE_WEB_UI`	Serve the AG-UI web interface	`True`

Security & Governance

Built directly upon the enterprise-ready agent-utilities core, standard security parameters are fully supported:

Access Control & Policy Enforcement

Eunomia Policies: Fine-grained, policy-driven tool authorization. Supports none, local embedded (mcp_policies.json), or centralized remote modes.
OIDC Token Delegation: Compliant with RFC 8693 token exchange for flowing authenticating user credentials from Web UI / ACP → Agent → MCP.
Scoped Credentials: Execution context runs restricted to the specific caller identity.

Runtime Security Grid

Feature	Functionality	Enablement
Tool Guard	Sensitivity inspection with human-in-the-loop validation	Enabled by default
Prompt Injection Defense	Input scanning, repetition monitoring, and recursive loop blocks	Enabled by default
Context Safety Guard	Stuck-loop detectors and contextual overflow preemptive alerts	Enabled by default

Installation

Pick the extra that matches what you want to run:

Extra	Installs	Use when
`repository-manager[mcp]`	Connector-focused MCP server (`agent-utilities[mcp]` — FastMCP/FastAPI + `epistemic-graph[full]`)	You only run the MCP server (smallest install / image)
`repository-manager[agent]`	Full agent runtime (`agent-utilities[agent-runtime,logfire]` — Pydantic AI + the epistemic-graph engine, plus `pre-commit` / `bump2version`)	You run the integrated agent
`repository-manager[all]`	Everything (`mcp` + `agent` + `logfire`)	Development / both surfaces

# Connector-focused MCP server (includes the shared graph engine)
uv pip install "repository-manager[mcp]"

# Agent runtime (adds model orchestration to the shared graph engine)
uv pip install "repository-manager[agent]"

# Everything (development)
uv pip install "repository-manager[all]"      # or: python -m pip install "repository-manager[all]"

Container images (`:mcp` vs `:agent`)

One multi-stage docker/Dockerfile builds two right-sized images, selected by --target:

Image tag	Build target	Contents	Entrypoint
`example/repository-manager:mcp`	`--target mcp`	`repository-manager[mcp]` — connector-focused, includes `epistemic-graph[full]`; no model-orchestration stack	`repository-manager-mcp`
`example/repository-manager@sha256:<digest>`	`--target agent` (default)	`repository-manager[agent]` — agent runtime, model orchestration + `epistemic-graph[full]`	`repository-manager-agent`

docker build --target mcp   -t example/repository-manager:mcp    docker/   # connector-focused MCP server
docker build --target agent -t example/repository-manager:agent-local docker/   # agent runtime

docker/mcp.compose.yml runs the connector-focused :mcp server; docker/agent.compose.yml runs the agent (immutable agent digest) with a co-located :mcp sidecar.

Knowledge-graph database (`epistemic-graph`)

Both [mcp] and [agent] carry the epistemic-graph engine through the required Agent Utilities core dependency (epistemic-graph[full]). The [mcp] extra keeps the server connector-focused; [agent] additionally enables model orchestration. Local deployments can use the bundled engine. For production or shared state, run epistemic-graph as a dedicated database service and configure the runtime to use it. Deployment recipes (single-node + Raft HA), connection configuration, and architecture diagrams are documented in the epistemic-graph deployment guide.

Repository Owners

Documentation

The complete documentation is published as the official documentation site and is the recommended reference for installation, deployment, and day-to-day operation.

Page	Contents
Installation	pip, source, extras, prebuilt Docker image
Deployment	run the MCP and agent servers, Compose, Caddy + Technitium, env config
Usage	the MCP tools, the `Git` client, the CLI
Overview	ecosystem role, enterprise readiness, architecture
Phased Maintenance	dependency-ordered workspace updates
Phased Push	parallel, phase-gated multi-repository releases
Concepts	concept registry (`CONCEPT:RM-*`)

AGENTS.md is the canonical contributor/agent guidance.

Contribute

Contributions are welcome! Please ensure code quality by executing local checks before submitting pull requests:

Format code using ruff format .
Lint code using ruff check .
Validate type-safety with mypy .
Execute test suites using pytest

Deploy with `agent-utilities-deployment`

Provision this package with the consolidated agent-utilities-deployment workflow. It selects an installed-package, editable-source, or immutable-container path; records only runtime secret and TLS-profile references in AgentConfig; and runs doctor, registration, policy, observability, and rollback gates. Ask your agent to "deploy repository-manager with agent-utilities-deployment".

Install mode	Command
Installed package	`uv tool install "repository-manager[mcp]"`, then run `repository-manager-mcp`
Editable source	`uv pip install -e ".[agent]"`, then run `repository-manager-mcp`
Immutable container	deploy `registry.example.invalid/repository-manager@sha256:<digest>` through the operator-selected orchestrator

The repository embeds no deployment profile, credential value, certificate path, or environment-specific endpoint. Supply those at runtime through AgentConfig and the configured secret provider.

Governed capability contract

This package ships a compact canonical skill surface with specialist procedures kept as referenced workflows. The current MCP tools, skill metadata, connector_manifest.yml, ontology, mappings, shapes, fixtures, migrations, tool-schema fingerprints, and certification metadata form one versioned capability contract. Validate them together; do not rely on stale tool names or historical per-task skill wrappers.

Runtime endpoints, credentials, certificate trust, tenant identity, retention, and observability policy are deployment inputs and are never packaged values. See Configuration, trust, and privacy before enabling a network transport, connector ingestion, GraphOS delegation, or trace export.

from github.com/Knuckles-Team/repository-manager

Installing Repository Manager

This server has no published package — it is built from source. Open the repository and follow its README.

▸ github.com/Knuckles-Team/repository-manager

FAQ

Is Repository Manager MCP free?

Yes, Repository Manager MCP is free — one-click install via Unyly at no cost.

Does Repository Manager need an API key?

No, Repository Manager runs without API keys or environment variables.

Is Repository Manager hosted or self-hosted?

A hosted option is available: Unyly runs the server in the cloud, no local setup required.

How do I install Repository Manager in Claude Desktop, Claude Code or Cursor?

Open Repository Manager on unyly.org, pick your client tab (Claude Desktop, Claude Code, Cursor) and press Install — the config is generated automatically, no JSON editing.

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Repository Manager

About

README

CLI or API | MCP | Agent

Overview

Key Features

CLI or API

MCP

Available MCP Tools

Condensed action-routed tools (MCP_TOOL_MODE=condensed)

Verbose 1:1 API-mapped tools (MCP_TOOL_MODE=verbose or both)

Dynamic Tool Selection & Visibility

MCP Configuration Examples

stdio Transport (local IDEs — Cursor, Claude Desktop, VS Code)

Streamable-HTTP Transport (networked / production)

Additional Deployment Options

Agent

Running the Agent CLI

Docker Compose Orchestration

Environment Variables

Package environment variables

Inherited agent-utilities variables (apply to every connector)

MCP server / transport

Workspace & repository management

Operations & gating

Version-control provider credentials

Tool toggles

Telemetry & governance

Agent CLI (full [agent] runtime only)

Security & Governance

Access Control & Policy Enforcement

Runtime Security Grid

Installation

Container images (:mcp vs :agent)

Knowledge-graph database (epistemic-graph)

Repository Owners

Documentation

Contribute

Deploy with agent-utilities-deployment

Governed capability contract

Installing Repository Manager

FAQ

Is Repository Manager MCP free?

Does Repository Manager need an API key?

Is Repository Manager hosted or self-hosted?

How do I install Repository Manager in Claude Desktop, Claude Code or Cursor?

Related MCPs

GitHub

Filesystem

Memory

Template MCP Server

Amap Maps Mcp Server

Supabase

Everything

Git

Sequential Thinking

Time

Compare Repository Manager with

Condensed action-routed tools (`MCP_TOOL_MODE=condensed`)

Verbose 1:1 API-mapped tools (`MCP_TOOL_MODE=verbose` or `both`)

Agent CLI (full `[agent]` runtime only)

Container images (`:mcp` vs `:agent`)

Knowledge-graph database (`epistemic-graph`)

Deploy with `agent-utilities-deployment`